rs238603559 SNP Detail

Summary

• ID
  rs238603559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44379348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAACCTA GGGGTTTGTG
  CATGCAAGGC AAGCACTTGG CCAACTGAGC CAGGTATGTC TCCAGCTCTA CTTGGGTTTT
  TTTTTTTTTA AGATTTATTT ATTATAAATT AAGTACACTG TAACACTGTA GCTGACCTCA
  GACACGCCAG AAGAGGGCAT CAGATTTCAT TAAGGGCGGT TGTGAGCCAC CATGTGGTTG
  Y
  TGGGATTTGA ACTCGGGACC TCTGGAAGAG CAGTCAGTGC TCTTAACCGC TGAGTCATCT
  CTCCAGCCCC TCTAGCTTTG TTTTTAAGCT AAGCATGAGA TGGCATGAAA TGCCTCAGCA
  CAGTACAACT TGGTGGGTGG ATGGGGGGGC ATGACACACT TTGCTGCTCA GTTTGGTACC
  TGAGCCCTCC CCTGACCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100967	CHEV_4_44392220	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238603559					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44379348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	1207 bp proximal
Gm68903	predicted gene, 68903	within coordinates