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rs238603559 SNP Detail
Summary
  • ID
    rs238603559
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:44379348 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTGAACCTA GGGGTTTGTG
    CATGCAAGGC AAGCACTTGG CCAACTGAGC CAGGTATGTC TCCAGCTCTA CTTGGGTTTT
    TTTTTTTTTA AGATTTATTT ATTATAAATT AAGTACACTG TAACACTGTA GCTGACCTCA
    GACACGCCAG AAGAGGGCAT CAGATTTCAT TAAGGGCGGT TGTGAGCCAC CATGTGGTTG
    Y
    TGGGATTTGA ACTCGGGACC TCTGGAAGAG CAGTCAGTGC TCTTAACCGC TGAGTCATCT
    CTCCAGCCCC TCTAGCTTTG TTTTTAAGCT AAGCATGAGA TGGCATGAAA TGCCTCAGCA
    CAGTACAACT TGGTGGGTGG ATGGGGGGGC ATGACACACT TTGCTGCTCA GTTTGGTACC
    TGAGCCCTCC CCTGACCCCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321100967 CHEV_4_44392220 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs238603559 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:44379348 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14212 CpG island 14212 1207 bp proximal
Gm68903 predicted gene, 68903 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory