rs238607563 SNP Detail

Summary

• ID
  rs238607563
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12768117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCATGGT GGTAAGACTC
  CACCAGCAGG TCTGGGACAA CCGTCAGAAC TAGCTGTAGA GTGCAGGGCC CAGGGCAGCA
  AAAGACAGAA AGGGTCACAT AAGTAGATAG GGTGTAGAAA CTGGAGGTAC GCTTGAGTAG
  TCAAAAAGGA TTAGCCGGTG AGAACTAGTT ATACATTTCT GACTCAAGCA CACCCACTCT
  M
  CTCTCTGCTC TGCTTCCACA GACGATGGGG CAAGCCTGTT TCTGACTTAA GGGTGTGGTT
  CTGAACTGTT CCAGGGACCC AGACCTGAGT AGGCACATCA AGGTGATTGA GTACTGAGGA
  GGGGGTAGTT GTGAGGCCCC TCGACAAGGG AGGATAGAAT GGAGTAGGTT CTGAAATGTG
  AAGTTGGGCC CTAAGGTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370654942	MGP_WTSI_7_13619539	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238607563					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654942	MGP_WTSI_7_13619539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12768117 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	within coordinates
Cpgi18334	CpG island 18334	51 bp proximal
Rr368233	regulatory region 368233	453 bp upstream
Tssr64534	transcription start site region 64534	674 bp upstream
Tssr70642	transcription start site region 70642	225 bp upstream
Tssr70643	transcription start site region 70643	154 bp upstream
Tssr70644	transcription start site region 70644	44 bp upstream
Tssr70645	transcription start site region 70645	211 bp downstream
Tssr70646	transcription start site region 70646	414 bp downstream
Tssr70647	transcription start site region 70647	513 bp downstream
Tssr70648	transcription start site region 70648	532 bp downstream
Tssr70649	transcription start site region 70649	1263 bp downstream
Tssr70650	transcription start site region 70650	1282 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	930 bp downstream