rs238609255 SNP Detail

Summary

• ID
  rs238609255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22037180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGTCCG CCTAGGGGCC
  GATGGGGGAG GGCTAGGTAC ATAGGGACTT TAATACAAAA AGGAGACAAG TTTGTGTGGC
  TTTGCCCCTT AGAATTTGCA CCCAATTTCA TCTCGTTGCT CTCTACTGAC TAAGGTTGAG
  GAAGTACTGT CCTTTCCTCC CATCCTGGAG CTGAATCACT TCGACTGCCC CCACCCCCAC
  Y
  CCGAGAGCCC CAGATCCCAG GGGGGAAAGA AACCCCACAG GAAGGCAGCC CTGGTAGGGG
  ACTCAGCTTG ACCCCGAGAG AAGGTCCTTA CCTCGATGGG GCTGACGGGC GTGGAAGGCA
  GGGGTTGCAA ATACTCTGGG TGCAAAATGT GGCCAGTCCG TGCCGTCAGC ATCTTCAGCA
  CCTTGATGGG CAGGCGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390501701	MGP_WTSI_14_22806334	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238609255					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390501701	MGP_WTSI_14_22806334	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22037180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	426 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	1807 bp proximal
Rr488632	regulatory region 488632	920 bp distal
Rr488633	regulatory region 488633	837 bp distal
Tssr127698	transcription start site region 127698	1455 bp upstream
Tssr127699	transcription start site region 127699	381 bp downstream
Tssr127700	transcription start site region 127700	444 bp downstream
Tssr127701	transcription start site region 127701	749 bp downstream
Tssr127702	transcription start site region 127702	773 bp downstream
Tssr127703	transcription start site region 127703	882 bp downstream
Tssr127704	transcription start site region 127704	1302 bp downstream
Zfp503	zinc finger protein 503	within coordinates