rs238609588 SNP Detail

Summary

• ID
  rs238609588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77774975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGGCTC AAGACACTCC
  AAGAGCGTGT TCTCTGCACA AAGGAGACTT ATTTGCCCCA GAAGGACAAA GGGCAAGAAA
  CAGGAGACAA AGACAGGACA CTAGGATGAG GGAGAAGGGG AAGGGAACAA GGGAGAGGGT
  AAAGGGGTAT TTGTCCCAAG GGAACAAAGG ACTGTCTCTG GATAGAGAGA AGACATACAT
  R
  TAGGAAAATA TTAGCGTAGC GGGTAGAGGG GTTAGGCTGA GGTATTTAAT TTAAATTGGG
  CATGTCAATT AGTTGACCCC AGAGAGGTTT TGGATTGTTG GACTTCAATG CTTTGATAGC
  TGGATCTCTG CAGGTTAGAT CAGGGAACAG ATCTTGGGGG CTAGCTTGAG GAATGTGATC
  TAACGGTTTT TAACAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss354556356	MGP_WTSI_2_77782688	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs238609588					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354556356	MGP_WTSI_2_77782688	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77774975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	1109 bp proximal
Cwc22	CWC22 spliceosome-associated protein	within coordinates
Gm74688	predicted gene, 74688	1483 bp upstream
Rr397064	regulatory region 397064	1653 bp upstream
Rr559852	regulatory region 559852	993 bp proximal
Rr559853	regulatory region 559853	1539 bp proximal
Tssr24874	transcription start site region 24874	1552 bp downstream
Tssr24875	transcription start site region 24875	1683 bp downstream
Tssr24876	transcription start site region 24876	1700 bp downstream
Tssr24877	transcription start site region 24877	1745 bp downstream