rs238611723 SNP Detail

Summary

• ID
  rs238611723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56266037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTCTCA GGCAGAGTTT
  TTCTAGTTTC TGGCTTGCTC CCCACCCTGG GAGCCTATCT GAATCTGCCT GGTGCTAGAA
  CTAGTAGCTG TCTCAGGCTC CCCTTTTTCA GGGAATATTA AGCTACTAGT CATTCAGATA
  TTCACAGATC AGAACATAGC ACATAGACAT AGCCTCTCTC CTGCCACCTA CTGACGCGCA
  Y
  GTGACACAGC AGTCACAACT GCAAGGCCTC TGGGGGAAGG GGCTTCAGGT TTCTAAGCCC
  ACCTTGCTGC TTCTCTTTCT CCTTCCTTCT CCCCTCCTGT CACCCACTCT GAGACCTGGG
  TTTTCTCACA CACCCATAAA GTGATGCATC CATTTCTATA CCTTCAGCTG ACAATACCTA
  ACACCAACCA ATCACAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856843	CHEV_19_56352095	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238611723					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56266037 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	within coordinates
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	232 bp distal
Rr549994	regulatory region 549994	2 bp distal
Rr549995	regulatory region 549995	397 bp proximal
Rr549996	regulatory region 549996	423 bp proximal
Rr549997	regulatory region 549997	487 bp proximal