rs238612646 SNP Detail

Summary

• ID
  rs238612646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATGGA AATTCCATCA
  CTAGCCAGGC AAGTTGAAGA CTCCAGAGGT TCGGGGAAGC AAGAAATCAA GTTCAAGGAA
  CTTGGCAGGC CCAAGTCTGG ATTTCTGGAA ACATATTTAG CCAAATGACC AGCCCTTCTT
  CTGAGGGCTG ATTCTACTTG CCCCTGCTTG GATTCATGAC GCTGCACCTG CCACCCACAC
  Y
  GTAAAAGAAT CCACTTCTTA GCTGACCCTC TTCAGAGAAA AAAAAGTTTC ACTTCATTCT
  TCCTTACTCC ATTCTTCTGC AATCACAGTT TCCATTTCTT TGACTATTTC TACTCATGTC
  TGAAGTTTCC CCAATTTTCC TTTATTAAAA AGAGGGAGGA GGACAGACAC ACCAAGACCT
  TCAAAACAGC AAGGACTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074141	CHEV_9_92435892	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238612646					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423107 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	803 bp proximal
Gm37545	predicted gene, 37545	971 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1169 bp upstream
Rr684632	regulatory region 684632	679 bp proximal
Rr684633	regulatory region 684633	1864 bp proximal
Rr684634	regulatory region 684634	1991 bp proximal
Tssr86520	transcription start site region 86520	1201 bp upstream
Tssr86521	transcription start site region 86521	1376 bp upstream