rs238618213 SNP Detail

Summary

• ID
  rs238618213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61675850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCCCACAG CACCCCTCAT GGTACCTGAC
  ATTTTCATCA TACCTCTTAG AGTCTAGGCA GTTCAATAAT AGTGGCCAGT GTGATTGCCT
  ACTGAAGTAT TGGGAAACAA ACAGGAAATC TCACAGCACA GGGGATGTTC ATCCATCCAG
  Y
  AGGCAAAAAC AAGATAATGG AACCCAGGTC TAGACTCCTC TAATATTACT AAATCAAGGC
  AAATTATTTA TTGTCTTCTG CCTAGGAAGC TCCCAGGGCA TGAAATATTG ATTTAGGTGT
  TTGCTAGGCA TGGATGACTG TGTTGCTCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741938	CHEV_1_61683265	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238618213					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61675850 () rs orientation: forward

Symbol	Name	Function Class
4930587A21Rik	RIKEN cDNA 4930587A21 gene	within coordinates
Cpgi308	CpG island 308	1914 bp proximal
Rr411949	regulatory region 411949	1655 bp proximal