rs238618458 SNP Detail

Summary

• ID
  rs238618458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33606081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCCCCT TTATGGAACT TCTAGAAAGT
  TCCATTTAGA AGATAGATAA CGCTATGCAA CTAAACAGTG CATTATATTG TTCATGGTGT
  Gataaaaata aaaaaaatta aaaaataaaa aGCAACAATT GAGAGCTGTG GGACAAATAG
  R
  TAAAATTTAC AGACCAAAGC CCTGACCCTC TAGAAGGCCG AGGAATTTGG GACCATATAG
  GCAGTGAGTA AACCCCGTAT GTGGaaccag gtatggtaga tcacacctat aatacacaca
  actttggggc tagcctgggc tacataatga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325139896	CHEV_16_33785797	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238618458					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33606081 () rs orientation: forward

Symbol	Name	Function Class
Gm15657	predicted gene 15657	within coordinates
Gm15658	predicted gene 15658	within coordinates
Rr326609	regulatory region 326609	within coordinates
Tssr140846	transcription start site region 140846	1257 bp downstream
Tssr140847	transcription start site region 140847	1393 bp downstream
Tssr140848	transcription start site region 140848	1455 bp downstream