rs238618835 SNP Detail

Summary

• ID
  rs238618835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36072974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTACCGA CGCTGAATCC
  ACGCCTAAGG GTGGGGCTGC ATCCTAGGGG TATTCTTTCC GAAGTTGCTG CACCTTCTAC
  GCCGCCTCCT TTGCGGGGCC CAGAAACACC GTCGTGGTTT GAGCTCTGAG AGGGAACGCG
  CGCCCTCTGG TGGCCGCGAC GCAGAACGGC TCCCAGGTTG CTGGAGAAGG GGCACTGTTG
  R
  GAGTACCTAC CTCTTCACCT GTTTGAGATT GTTTTCCAAC CCCTAGCAGT CTTTGAAGGG
  TCAAATGCAT CCACCCTTCC TCTCACAAAA TGAGATTTCC TTCCAAAAAA TGGGAGGAAT
  GGACTCCTAT CTGTGCACGT GGCCAGGCTA CAGTAGGAGG GACCAGGTTA GGTGTCTGCA
  GAGTCTTGTG CTTGGGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584111	CHEV_18_36099575	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238618835					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36072974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9857	CpG island 9857	1086 bp distal
Cpgi9858	CpG island 9858	within coordinates
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	556 bp distal
Rr536028	regulatory region 536028	264 bp distal
Rr536029	regulatory region 536029	43 bp distal
Rr536030	regulatory region 536030	475 bp proximal
Rr536031	regulatory region 536031	1987 bp proximal
Tssr152921	transcription start site region 152921	1712 bp upstream