rs238624348 SNP Detail

Summary

• ID
  rs238624348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142206893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGCAT
  ATGTGTTATG TGTATGTGTG TGTTAATGCC TGTGGGTGTG AGTATAATCA TGTGCTTTTT
  AGGGTAGGTA GGGAAAAGTG AGATTTTGGG ACTGGGGGCT TGTGCCAATT AAGTTCTATT
  TCCAGTTTTC ATGTTCTGTT CTTCTCCTTG GGTTCTTTCA CCCAGCCCCC TTGGTGACAT
  R
  GGGGACATTT GTGATGGAAT GACCAGTGAA GAAAGAGTTT GGGCGGCTAT TGTTGTTCTC
  AGCCAGCTTT ACACTAAAGG TGCTTGGGAT AAGGAGAGGG CACTGAAGCA ATGACATGCC
  ACCTGCAAAA TTTTGGGTCC CCTTCCTTTC TTCTTGGGTT CTGGGATCCA AGTCTTAGCC
  AATTTGACTA AAGATCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454555	MGP_WTSI_7_149839061	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238624348					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454555	MGP_WTSI_7_149839061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142206893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1129 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	61 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1768 bp downstream
Rr167001	regulatory region 167001	507 bp proximal
Tssr2462	transcription start site region 2462	99 bp downstream
Tssr2463	transcription start site region 2463	688 bp downstream
Tssr70229	transcription start site region 70229	139 bp downstream
Tssr70230	transcription start site region 70230	46 bp downstream
Tssr70231	transcription start site region 70231	397 bp upstream
Tssr70232	transcription start site region 70232	433 bp upstream
Tssr70233	transcription start site region 70233	483 bp upstream
Tssr70234	transcription start site region 70234	509 bp upstream
Tssr70235	transcription start site region 70235	545 bp upstream
Tssr70236	transcription start site region 70236	577 bp upstream
Tssr70237	transcription start site region 70237	673 bp upstream
Tssr70238	transcription start site region 70238	692 bp upstream
Tssr70239	transcription start site region 70239	836 bp upstream
Tssr70240	transcription start site region 70240	1157 bp upstream
Tssr75849	transcription start site region 75849	1811 bp upstream
Tssr75850	transcription start site region 75850	1765 bp upstream
Tssr75851	transcription start site region 75851	1752 bp upstream
Tssr75852	transcription start site region 75852	1562 bp upstream
Tssr75853	transcription start site region 75853	1521 bp upstream
Tssr75854	transcription start site region 75854	1114 bp upstream
Tssr75855	transcription start site region 75855	930 bp upstream
Tssr75856	transcription start site region 75856	891 bp upstream
Tssr75857	transcription start site region 75857	876 bp upstream
Tssr75858	transcription start site region 75858	838 bp upstream
Tssr75859	transcription start site region 75859	782 bp upstream
Tssr75860	transcription start site region 75860	727 bp upstream
Tssr75861	transcription start site region 75861	695 bp upstream
Tssr75862	transcription start site region 75862	148 bp upstream
Tssr75863	transcription start site region 75863	117 bp upstream
Tssr75864	transcription start site region 75864	88 bp upstream
Tssr75865	transcription start site region 75865	55 bp upstream
Tssr75866	transcription start site region 75866	8 bp upstream
Tssr75867	transcription start site region 75867	14 bp downstream
Tssr75868	transcription start site region 75868	37 bp downstream
Tssr75869	transcription start site region 75869	47 bp downstream
Tssr75870	transcription start site region 75870	68 bp downstream
Tssr75871	transcription start site region 75871	109 bp downstream
Tssr75872	transcription start site region 75872	510 bp downstream
Tssr75873	transcription start site region 75873	532 bp downstream
Tssr75874	transcription start site region 75874	741 bp downstream
Tssr75875	transcription start site region 75875	778 bp downstream
Tssr75876	transcription start site region 75876	810 bp downstream
Tssr75877	transcription start site region 75877	886 bp downstream
Tssr75878	transcription start site region 75878	1162 bp downstream
Tssr75879	transcription start site region 75879	1184 bp downstream
Tssr75880	transcription start site region 75880	1234 bp downstream