rs238626152 SNP Detail

Summary

• ID
  rs238626152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78716980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTCTTTC AGGATATAAA ACTTGTGTTT
  AAATCAATTC AGAGAAGCAT TCTGACTTTA AACATGCGCG AGTGGGGAGA ACCCGTTTAA
  TGAAACAGCA TTATTTCATT TTCAAAAAAT GATCCCGGCA GTAGCTGCAA GTTAAGATTC
  Y
  TCATTCTCTC CCTCGATTAT AATTATAGCA GAGTTGAAAG GAAGCGTGCC TATTACTGTC
  ATATGTATTC TTCTGACAGG TGTTGTGGGA CTGTAATTTG ATCAAGTGAC TCGAAATGAA
  GACTCCCTTC CAAACATAAT TCCTGTCATC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757672	CHEV_11_78639656	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238626152					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78716980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	275 bp proximal
D11Bhm79	DNA segment, Chr 11, Boehm 79	1576 bp distal
Gm23219	predicted gene, 23219	1681 bp downstream
Lyrm9	LYR motif containing 9	441 bp upstream
Tssr103332	transcription start site region 103332	421 bp upstream