rs238633647 SNP Detail

Summary

• ID
  rs238633647
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT ATTATTATAT TTATCTATTA
  C
  ATCCCTATTA ATTCAGCCAC AGGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351223	CHEV_4_134774111	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238633647					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945507 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	307 bp distal
Rr86244	regulatory region 86244	1294 bp proximal
Rr102925	regulatory region 102925	1895 bp proximal
Tssr43955	transcription start site region 43955	1800 bp upstream
Tssr43956	transcription start site region 43956	1769 bp upstream
Tssr43957	transcription start site region 43957	1519 bp upstream
Tssr43958	transcription start site region 43958	1383 bp upstream
Tssr43959	transcription start site region 43959	1362 bp upstream
Tssr43960	transcription start site region 43960	1210 bp upstream
Tssr43961	transcription start site region 43961	1151 bp upstream
Tssr43962	transcription start site region 43962	1105 bp upstream
Tssr43963	transcription start site region 43963	1046 bp upstream
Tssr43964	transcription start site region 43964	934 bp upstream
Tssr43965	transcription start site region 43965	416 bp downstream