rs238633648 SNP Detail

Summary

• ID
  rs238633648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105513722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACGTTC TGTAGAGCAG
  TGCAGGACTT GGGATTTGCA GTGCTGTTCC AACACTGCAG AGACTTCTGT GTGGACTCTG
  TGGTGACACT CAGAGGTGAT GTAGGGAGAA GAATTTAAGA GCTTGACTTT TGCCCCTTGT
  GGGTTCCAAG AAGGGCTGGG GGTGCGTATG AAGGGGGCAA TAGACTCAGG GATGATGGTA
  Y
  TGGGTGGATA TGTTCCTGTG TATTCTCCCA GGTCTGACAA CAGTCCAGTG GGCAGGTTCA
  AATTGTATTT GAGGCTGGGC TGCCCAGTAT ACTGCATGGC TGGTGGTTCT GTTATTGGGT
  GTTTTTTTTT TGTTTGTTTG TTTTTTTGTT TTTTTGTTTT TTAAAACCAG GACCTAATTG
  CTGAGGTTCA CACAGGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355141908	MGP_WTSI_2_105523534	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238633648					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355141908	MGP_WTSI_2_105523534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105513722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12021	CpG island 12021	1689 bp distal
Cpgi12022	CpG island 12022	961 bp distal
Pax6	paired box 6	within coordinates
Rr55347	regulatory region 55347	within coordinates
Rr55348	regulatory region 55348	1878 bp proximal
Rr366621	regulatory region 366621	524 bp downstream
Tssr588	transcription start site region 588	189 bp upstream
Tssr19262	transcription start site region 19262	1172 bp downstream
Tssr19263	transcription start site region 19263	886 bp downstream
Tssr19264	transcription start site region 19264	847 bp downstream
Tssr19265	transcription start site region 19265	690 bp downstream
Tssr19266	transcription start site region 19266	632 bp downstream
Tssr19267	transcription start site region 19267	400 bp downstream
Tssr19268	transcription start site region 19268	359 bp downstream