rs238636550 SNP Detail

Summary

• ID
  rs238636550
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:72345703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGAGGG CCCAGCACCC
  ACGTTAGGCA ACTTGCTACC GACTGAGGAT GGTAGAGGGG CACCATCCCT CAGTCCACTG
  CAGTGACAAG TCCGAGCTTA TTGGGGTTCC TTGGGGCTTT AGCTGGGCTC CAGACCGCAG
  AGATTAGCTC CCTTCGGATG TAAACGGCTC CCGCTAGGGC AAAGCGTCCG AACTTCGCGC
  K
  TTTGGCTTGG TCCTATGGAA GGAGCGCTCC TGCCTGGCAA CGAAGACTCT CCGTGCTGAT
  TGGATATTGT GCCAGCCAAT GGGAGGCCGC GTCCCTCTTG GGCGGGCGGT GCATTTTTGG
  CGGTTGCCGG GACACAGCTT AAACTTAACC CAGCGTGCAC AGGTATCCGC TGCCGTGGCT
  GCTGCTCCGG AAGACGCGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378018615	MGP_WTSI_9_72286228	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238636550					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378018615	MGP_WTSI_9_72286228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72345703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	within coordinates
Mns1	meiosis-specific nuclear structural protein 1	Intron
Rr401506	regulatory region 401506	within coordinates
Rr682742	regulatory region 682742	within coordinates
Rr682743	regulatory region 682743	125 bp proximal
Rr682744	regulatory region 682744	1780 bp proximal
Tssr85997	transcription start site region 85997	405 bp downstream
Tssr85998	transcription start site region 85998	98 bp upstream
Tssr85999	transcription start site region 85999	113 bp upstream
Tssr86000	transcription start site region 86000	158 bp upstream
Tssr86001	transcription start site region 86001	188 bp upstream
Tssr86002	transcription start site region 86002	422 bp upstream