rs238638867 SNP Detail

Summary

• ID
  rs238638867
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129205254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATACAGA TTTGGTTTTG
  GCAATGAATT TAGATCACAG GATTTGCTGT GAAAGAGTAT TTTCTGTAAG ATTATCTCAT
  GTGAAATATG GTCAAGATAA TCTAAATTTT TCAAGAAATT TTCTTTTCAG TAATTGGTGT
  GGTATGGAGC CAACATTTTC TTTTTTCTGT TGTTTATTCT CTCACTCTTT CTTCCTTTCT
  C
  CCCCCCCCCC CCCGCCTTAT ATAAGCCCTA GGGATTGAAT CTAGGACCTT GTGAATACTA
  GGCAAGTATA TGCTTACTAG ACCAGCATAG TCCTGTATCC CCAGACCTTG TTTTACCTTT
  TATATTCACT AAATTGCACA GGATGGCTTT GTGCTTTCTC TGTAGTTAGG CAGTCCTTCA
  ACAGCCATTC TCCTGACTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370046190	MGP_WTSI_6_129178309	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238638867					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370046190	MGP_WTSI_6_129178309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129205254 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	528 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	1036 bp upstream
Rr639406	regulatory region 639406	697 bp proximal
Tssr59119	transcription start site region 59119	1085 bp upstream
Tssr59120	transcription start site region 59120	1104 bp upstream
Tssr63549	transcription start site region 63549	796 bp downstream
Tssr63550	transcription start site region 63550	946 bp downstream
Tssr63551	transcription start site region 63551	1971 bp downstream