rs238649749 SNP Detail

Summary

• ID
  rs238649749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90183910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGTGGGC CACCGGGCAC
  CTACTGATGG ATGATGGTGG TGATGGGCTC ACGTTCGTGG GGTGGGGTAC CCGGGCAGAT
  AGATGTACCC GCGAAGCTAC CCCGCACCGT CTTTCTGTTT TGTTTTGGAA GGGTGCCGCC
  TGGCGGACGC CAGGGAAGGG AGGGGAGAGG TGGCGGTGGA GGGTCCTGCG GTAGGGGCAT
  R
  GATCAGTGCA GAGGCGGGAA CTAGATCCAG GCTGGGGTTC AGCTTTGCCT GTGGAATGTG
  CGGCGGCGGG AGAGCAAGGC AGCCAGTCTG AGGTTGCTTA GAGTTTCATC CCTCCTGGGC
  TCAGGCGAGG ACGTGGAGGG GAGTTGGGGC CCTGTAAGCT CCCCTCTCCC CCCGTGTGGG
  CTGGGGCAAC TGTTGGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397293401	MGP_WTSI_16_90387267	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238649749					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397293401	MGP_WTSI_16_90387267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90183910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	within coordinates
Gm60085	predicted gene, 60085	1011 bp downstream
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519119	regulatory region 519119	1893 bp distal
Rr519120	regulatory region 519120	999 bp distal
Rr519121	regulatory region 519121	507 bp distal
Rr519122	regulatory region 519122	50 bp distal
Tssr139286	transcription start site region 139286	1137 bp downstream
Tssr139287	transcription start site region 139287	1078 bp downstream
Tssr139288	transcription start site region 139288	1053 bp downstream
Tssr139289	transcription start site region 139289	999 bp downstream
Tssr139290	transcription start site region 139290	970 bp downstream
Tssr139291	transcription start site region 139291	568 bp downstream