rs238651516 SNP Detail

Summary

• ID
  rs238651516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:30225489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGATAGA TGGGACCCCC
  CCACTCCTAC CAGCAGTTAT AGTTGGTCCT TGGAACACTT TGGGTTTTCT AGATTGTCAC
  CTAACAAGCA ATGGTCACAG CTCATGACTA GTTCTGTGTA AGGTTACTGG AGAGTTACAG
  CAGCTTTTGA GAGTCAGGCT TTTTATCCTT TTTAAAGATT GTGTTGGGAT GTATATGAAC
  R
  AAATTGGCTG TTTCTAGTGA AGATACCCTG GGAAGTAGCT ATTTTATACT CCAGGAATGG
  TTGATAAAGA AATTAAAGAC ATGCTTAGGA GTGAAGAAGA GTAGAAAGTG CAGTGTAATG
  CAGATCTCTG GAAGGTTTCA AGTGTATCCT TTCAAAAAAT TCTTCAGAGG AGGATAGGGA
  TCTAGGACAA GTTGTAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397979256	MGP_WTSI_17_30143460	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238651516					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397979256	MGP_WTSI_17_30143460	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30225489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8934	CpG island 8934			732 bp distal
Gm50019	predicted gene, 50019			1723 bp upstream
Rr525145	regulatory region 525145			1772 bp distal
Rr525146	regulatory region 525146			1441 bp distal
Rr525147	regulatory region 525147			561 bp distal
Rr525148	regulatory region 525148			1233 bp proximal
Tssr143601	transcription start site region 143601			1996 bp downstream
Tssr143602	transcription start site region 143602			1669 bp downstream
Tssr143603	transcription start site region 143603			1639 bp downstream
Tssr143604	transcription start site region 143604			1417 bp downstream
Tssr143605	transcription start site region 143605			722 bp downstream
Tssr143606	transcription start site region 143606			610 bp downstream
Tssr143607	transcription start site region 143607			1140 bp upstream
Tssr147242	transcription start site region 147242			1875 bp upstream
Tssr147243	transcription start site region 147243			875 bp upstream
Zfand3	zinc finger, AN1-type domain 3			Intron
				Noncoding-Transcript-Variant