rs238653365 SNP Detail

Summary

• ID
  rs238653365
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21321026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGCCCC CCGGGCCTGG
  CCGCCCAGAC CCCCCGGGAG GCCTGGCCCT CCCTGACACG CCCTCGCCCG CCCGCCCGCC
  CGCCCCCTAC TCTTCCACGC CCCACTGTCG GCCCCCGGCC ACGCCTTTCG GAGCAGGACC
  CCACAAGGAG GTCGCTCGGA GCCCGGCCCG CCCCTTAAGC GACACCCACC TTCCTATTCC
  S
  TCGAGGGCTG AGAAGTTGGG GGCCTGGAAT CAGGTCTCGC ACGCTGCACG AGCGTGGCCG
  AGGCGACCTC CCCTCCGCTC CCGTCACACG CAAACACCTG GAGCCTGGCG CCAGCGTGCG
  CAGCCCCTGA CCCTCCAGCC CGCCGCCTCC GGACACCGGA GCCCCCACTT TCGCCACACA
  CCTCCCCTCC CCCTCCTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323594392	CHEV_11_21271029	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238653365					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21321026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	within coordinates
Gm12043	predicted gene 12043	within coordinates
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	111 bp upstream
Tssr3440	transcription start site region 3440	248 bp upstream
Tssr3441	transcription start site region 3441	220 bp upstream
Tssr3442	transcription start site region 3442	within coordinates
Tssr100572	transcription start site region 100572	289 bp downstream
Tssr107064	transcription start site region 107064	541 bp upstream
Tssr107065	transcription start site region 107065	443 bp upstream
Tssr107066	transcription start site region 107066	370 bp upstream
Tssr107067	transcription start site region 107067	353 bp upstream
Tssr107068	transcription start site region 107068	337 bp upstream
Tssr107069	transcription start site region 107069	117 bp downstream
Tssr107070	transcription start site region 107070	238 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates