rs238654381 SNP Detail

Summary

• ID
  rs238654381
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61678785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TCACTTGAGG GGTCCTTACA
  M
  CTCCGCCATC TGGGGCCTAC TCCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741955	CHEV_1_61686200	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238654381					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61678785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	within coordinates
Pard3b	par-3 family cell polarity regulator beta	within coordinates
Rr29520	regulatory region 29520	within coordinates
Tssr95	transcription start site region 95	703 bp downstream
Tssr6971	transcription start site region 6971	785 bp downstream
Tssr6972	transcription start site region 6972	735 bp downstream
Tssr6973	transcription start site region 6973	671 bp downstream
Tssr6974	transcription start site region 6974	613 bp downstream