rs238654859 SNP Detail

Summary

• ID
  rs238654859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGGCTT CAGGGCCACA
  CAGGAAAACG CCTATTGTGG TGCTTTGGAG AGAGAAAAGA AAGTTTCAGT CAACATGAGT
  TGGGCAGCAG CGAGGGTAGT AAATTTCCTG TTCAGTTGAG GCCACTCTAT TCCTACTTTT
  TTCCACAAGG GACAAAAATG TTCAATTTAC TCACAAGGAG CAGGCTCGAC TGAGTATAGA
  R
  ACGGCTGGCA AACTCAAATG GAGTTAACAT CCCCAGAAAA TGAAACCCAA GCAGGGGTTT
  GGAAATTTCT TCCACAGAGG TATCATGGTA GTGGCTGATT TTGTGTGTCA ACTTGATACA
  AGCTGGAGTT ATCACAGAGA AAGGAGCCTC CCTTGAGGAA ATGCTTTCAT GAGATCCAGC
  TGTAAGGCAT TTTCTCAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025299	MGP_WTSI_X_9015628	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238654859					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025299	MGP_WTSI_X_9015628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304741 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160519	transcription start site region 160519	1857 bp downstream
Tssr160520	transcription start site region 160520	1793 bp downstream
Tssr160521	transcription start site region 160521	1739 bp downstream
Tssr160522	transcription start site region 160522	1622 bp downstream
Tssr162882	transcription start site region 162882	1838 bp upstream
Tssr162883	transcription start site region 162883	1448 bp upstream
Tssr162884	transcription start site region 162884	1383 bp upstream
Tssr162885	transcription start site region 162885	1347 bp upstream
Tssr162886	transcription start site region 162886	1327 bp upstream
Tssr162887	transcription start site region 162887	1289 bp upstream
Tssr162888	transcription start site region 162888	1235 bp upstream
Tssr162889	transcription start site region 162889	1217 bp upstream
Tssr162890	transcription start site region 162890	1147 bp upstream
Tssr162891	transcription start site region 162891	1119 bp upstream
Tssr162892	transcription start site region 162892	1064 bp upstream
Tssr162893	transcription start site region 162893	959 bp upstream
Tssr162894	transcription start site region 162894	923 bp upstream
Tssr162895	transcription start site region 162895	867 bp upstream
Tssr162896	transcription start site region 162896	840 bp upstream
Tssr162897	transcription start site region 162897	809 bp upstream
Tssr162898	transcription start site region 162898	789 bp upstream
Tssr162899	transcription start site region 162899	649 bp upstream
Tssr162900	transcription start site region 162900	631 bp upstream
Tssr162901	transcription start site region 162901	602 bp upstream
Tssr162902	transcription start site region 162902	519 bp upstream
Tssr162903	transcription start site region 162903	465 bp upstream
Tssr162904	transcription start site region 162904	358 bp upstream
Tssr162905	transcription start site region 162905	284 bp upstream
Tssr162906	transcription start site region 162906	269 bp upstream
Tssr162907	transcription start site region 162907	197 bp upstream
Tssr162908	transcription start site region 162908	166 bp upstream
Tssr162909	transcription start site region 162909	1421 bp downstream
Tssr162910	transcription start site region 162910	1446 bp downstream
Tssr162911	transcription start site region 162911	1500 bp downstream