About   Help   FAQ
rs238655097 SNP Detail
Summary
  • ID
    rs238655097
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr9:45312838 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGACACTTAG GAGCGTCTCT
    AAGTGAAGCC CAGGAGGAAA AACCTGAGGT CAGAGGGAAC ATTTTGGGAA CTCAAAACCC
    ATCTTTGCTA AGATCCTGAG GCAGGAGTGA GCCCTGTAAG GTCAGAGAGC CACTAAGGGG
    ACCCTATGGT TAGAATGGAC AGAAAAGTTG GGGTCAGGGT TAGAGAGTCC ACTAGGATGA
    K
    ATTAAGAAGG AACCCAAAAA TGAGAGCCAG CAAGAGGAGA AGTTAAGGCT CTTGCCACAA
    AGCCTGGCAA TGTGAACTCA ATCTCTGGGC CCTACGAAGT GTCCTCTGGT CTGCGGACAT
    CTACATGACC CATGCAGGCT CTCATACACA TAATGGATAA CTAAATACAT AAACATAATA
    AGAAAATTTA CGAAGGGACA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377432846 MGP_WTSI_9_45209623 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238655097 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss377432846 MGP_WTSI_9_45209623 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:45312838 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Fxyd2 FXYD domain-containing ion transport regulator 2 within coordinates
Gm68814 predicted gene, 68814 within coordinates
Rr195106 regulatory region 195106 363 bp proximal
Rr200381 regulatory region 200381 163 bp proximal
Tssr84781 transcription start site region 84781 1871 bp downstream
Tssr84782 transcription start site region 84782 1822 bp downstream
Tssr84783 transcription start site region 84783 1025 bp upstream
Tssr84784 transcription start site region 84784 1075 bp upstream
Tssr84785 transcription start site region 84785 1602 bp upstream
Tssr84786 transcription start site region 84786 1634 bp upstream
Tssr84787 transcription start site region 84787 1656 bp upstream
Tssr84788 transcription start site region 84788 1687 bp upstream
Tssr84789 transcription start site region 84789 1713 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory