rs238658189 SNP Detail

Summary

• ID
  rs238658189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122849613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAATGT ATCCCTAACA
  TATATCCATA CACACTGCCA TTGACTGAAT TCAGGATTTT TCATGTATTA TGGAAGCACT
  GAGCTATAAC CCCAACTCTC CTTTATTACA AAAACAAAAA CTTTTTGAGA GTCTCAAAAA
  GTCCTTGGCT TGCTTAGTAC CTCTCTGTTG GTCAGGCTGG CCTCAAACTC AGTAATTCTA
  M
  CTCAGCTTCA GAAGTGCTAG GATTACGGGT GTGTGCCACC ATGCCTGGCT GCCAGCCCTC
  TCAAGTGAGA CAATGTCTCC CTAAGTTGCT CAGGATGACC ATTAACTGCC TCAGCATCCT
  AAGCATCTGG AATTACCGAC AGTAGATGAC ATTTTACGGT TTGTTTGGGT TTTTTTTTTT
  TTTGGTTGTT TTTTCAATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379222219	MGP_WTSI_9_122929666	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238658189					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379222219	MGP_WTSI_9_122929666	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122849613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22546	CpG island 22546	263 bp proximal
Gm9856	predicted gene 9856	within coordinates
Gm49323	predicted gene, 49323	870 bp upstream
Kif15	kinesin family member 15	1815 bp downstream
Rr205950	regulatory region 205950	within coordinates
Tmem42	transmembrane protein 42	778 bp upstream
Tssr87875	transcription start site region 87875	571 bp upstream
Tssr87876	transcription start site region 87876	767 bp upstream
Tssr92115	transcription start site region 92115	666 bp downstream
Tssr92116	transcription start site region 92116	867 bp downstream
Tssr92117	transcription start site region 92117	974 bp downstream