rs238661909 SNP Detail

Summary

• ID
  rs238661909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59520137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTGCCG GTGCGCAGCC
  AGGAGGTGCG CGCGCGGCCG CCGGGAGCTC GGTGCTCCAT TGTGTTGTGT GAATGATGCG
  CGCGCACCAA TCAGCGGTCG TTTCGCCCCT GCTGCCCCGC CCCTCCCGCC CACTTCCCCG
  GGAACCTGAC GTCACGGGAG CTTTGCCTCC GCCCCCTCCC TGGGCTACGG GCCCGCGGGC
  Y
  TGCGGTGGGG CGCGCGCAGC CTGCTGCCCA GCCCAACCCG GGGGGCGTGT GCGCGCGCCC
  AAGGCGTCCC AGGACGTTCC CACCTGCGCC TCGGCGCGCG CGGTCAGGAG CATCCCCAGG
  CCTCCAGCCA CCCCTTACAG TTCCAGCCTC CAACTCCACC TCCCCTCCCC CCTAGTCTCC
  TCCCTCCGCT CCGGTGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss394214951	MGP_WTSI_15_59479843	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238661909					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214951	MGP_WTSI_15_59479843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59520137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	within coordinates
Gm56697	predicted gene, 56697	within coordinates
Rr502887	regulatory region 502887	111 bp distal
Rr502888	regulatory region 502888	within coordinates
Rr502889	regulatory region 502889	126 bp proximal
Rr502890	regulatory region 502890	1159 bp proximal
Rr502891	regulatory region 502891	1324 bp proximal
Trib1	tribbles pseudokinase 1	366 bp upstream
Tssr4603	transcription start site region 4603	1982 bp downstream
Tssr131384	transcription start site region 131384	9 bp upstream
Tssr131385	transcription start site region 131385	68 bp upstream
Tssr131386	transcription start site region 131386	134 bp upstream
Tssr131387	transcription start site region 131387	215 bp upstream
Tssr131388	transcription start site region 131388	262 bp upstream
Tssr131389	transcription start site region 131389	290 bp upstream
Tssr131390	transcription start site region 131390	356 bp upstream
Tssr131391	transcription start site region 131391	406 bp upstream
Tssr134443	transcription start site region 134443	1930 bp upstream
Tssr134444	transcription start site region 134444	152 bp upstream
Tssr134445	transcription start site region 134445	120 bp upstream