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rs238662874 SNP Detail
Summary
  • ID
    rs238662874
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr13:41759249 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGGGGCGCG CAGTCAGGAG
    GGGGCGAGGG GCTTGGAGTC TGTTCCCTCG GAGCAGCCAA TGAGCGGCGA GACCCAGCGG
    TGGCGCCAGT GACGTAGGTG GCGCTCCCTC CGCCCCACTG CGGGCGGACG CTGGGAGCCG
    ACGACAGCCT GAGCTCCCGG GTGCCTAGGG CGGCGCGCGC GCGCGCGCGA GGAGCGGGGG
    R
    GAGGCAGTGC GCGTGCGCAG CCGCTCACCC CCGGGGAGGC GGGGCCGAGG AGCGGACACG
    CGCATGCGCG CGCCCCGGGG CGGTCGCGGG CGGAGGGGGC GGCTCCTCGA GTGTTGGCTA
    CCCAAAGGCC GAGCGGCAGG CGGGCGGCAG GTGCCGCGGC CGGGCGCCGC TGCCTCGTCG
    CGCGTCCCCG CGATGAGCCT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss388394229 MGP_WTSI_13_41701142 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs238662874 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss388394229 MGP_WTSI_13_41701142 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:41759249 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5501 CpG island 5501 within coordinates
Gm32184 predicted gene, 32184 17 bp upstream
Rr281294 regulatory region 281294 within coordinates
Tmem170b transmembrane protein 170B 134 bp upstream
Tssr119412 transcription start site region 119412 48 bp upstream
Tssr119413 transcription start site region 119413 94 bp upstream
Tssr119414 transcription start site region 119414 131 bp upstream
Tssr122210 transcription start site region 122210 272 bp upstream
Tssr122211 transcription start site region 122211 228 bp upstream
Tssr122212 transcription start site region 122212 636 bp downstream
Tssr122213 transcription start site region 122213 1998 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory