rs238662874 SNP Detail

Summary

• ID
  rs238662874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41759249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGCGCG CAGTCAGGAG
  GGGGCGAGGG GCTTGGAGTC TGTTCCCTCG GAGCAGCCAA TGAGCGGCGA GACCCAGCGG
  TGGCGCCAGT GACGTAGGTG GCGCTCCCTC CGCCCCACTG CGGGCGGACG CTGGGAGCCG
  ACGACAGCCT GAGCTCCCGG GTGCCTAGGG CGGCGCGCGC GCGCGCGCGA GGAGCGGGGG
  R
  GAGGCAGTGC GCGTGCGCAG CCGCTCACCC CCGGGGAGGC GGGGCCGAGG AGCGGACACG
  CGCATGCGCG CGCCCCGGGG CGGTCGCGGG CGGAGGGGGC GGCTCCTCGA GTGTTGGCTA
  CCCAAAGGCC GAGCGGCAGG CGGGCGGCAG GTGCCGCGGC CGGGCGCCGC TGCCTCGTCG
  CGCGTCCCCG CGATGAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388394229	MGP_WTSI_13_41701142	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238662874					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388394229	MGP_WTSI_13_41701142	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41759249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5501	CpG island 5501	within coordinates
Gm32184	predicted gene, 32184	17 bp upstream
Rr281294	regulatory region 281294	within coordinates
Tmem170b	transmembrane protein 170B	134 bp upstream
Tssr119412	transcription start site region 119412	48 bp upstream
Tssr119413	transcription start site region 119413	94 bp upstream
Tssr119414	transcription start site region 119414	131 bp upstream
Tssr122210	transcription start site region 122210	272 bp upstream
Tssr122211	transcription start site region 122211	228 bp upstream
Tssr122212	transcription start site region 122212	636 bp downstream
Tssr122213	transcription start site region 122213	1998 bp downstream