rs238671588 SNP Detail

Summary

• ID
  rs238671588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:30852694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTCATT TTTGGTAGAA
  AACAGAGATG CTTTCCATTC CCCTGCCTCT AGGAGTGTTT TACCCAAACT TCCAATTCTC
  TATACAGCAA AGGAAGGAGA TTCAACCACT CCTTTGCAGT CCTATAAAAG TGGAGAGAGC
  TTGCGGTGCT GGGGCCTTTC CTTAGGTTCT GTAGTGACAC AAGTTAATTT AAGAGACTCC
  Y
  CTTTGTAGGT AACAAGTCCC AAGGAGTCTT TTGCATAGGC CAATCCTTCA CAGCTACAGA
  AATGGATTGG ATCGGCCAAA CGAAGTAAGA ATGACTCAAC TGTAGGCACC CTCACATAAG
  CAAAGAGCTG CGTAGTTGGG GGTAGGTGAG CTGCCAAATG CTGTATCCTC CATGATTGTC
  TCAGAAAAGA CACAGGGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889044	CHEV_9_30748983	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238671588					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:30852694 () rs orientation: forward

Symbol	Name	Function Class
Adamts8	ADAM metallopeptidase with thrombospondin type 1 motif 8	1164 bp upstream
Cpgi21523	CpG island 21523	860 bp proximal
Gm10700	predicted gene 10700	within coordinates
Gm69354	predicted gene, 69354	within coordinates
Rr675918	regulatory region 675918	612 bp distal
Rr675919	regulatory region 675919	864 bp distal
Rr675920	regulatory region 675920	674 bp proximal
Tssr84208	transcription start site region 84208	1143 bp upstream