rs238673739 SNP Detail

Summary

• ID
  rs238673739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGGCTG CTGGTCACAT
  GGTTTCTGAA GTCCAAAGTG CAAGGAGTGT TAGCACATTA GTGCTCAGCT CGCTTTCTCC
  ACTTTATACA ATTCAGCATT CCAGCCAAGG ACTAGAGCAT CCAGAGTGGA CAGCTCCTCC
  CACCTCAACC AATGGAATCT TGAGGACCCC CCCCCCCCTG CCAAGATGTG CTTTAACCCG
  R
  CCCATCACAT TGGGTTTTCC TCTCACCATA TGAAAATCAT TAAACCGTTA CAATTTTCTA
  CCAGGTTCCC TTAAAACCTT TAAAGAGAAA ACACATTTAT TTATTCAGTA TGGATACGTG
  TATGTATATG TGCATGTGTG TGGACATATG CACTCTGATG TAGAGGCTAA GGTCAGAGGA
  CAACTTATGG AAGTCAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783783	CHEV_11_88873939	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238673739					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903451 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	1716 bp downstream
Tssr104067	transcription start site region 104067	1648 bp downstream