rs238673764 SNP Detail

Summary

• ID
  rs238673764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:8757529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGGAAG CTGTATGTCA
  GGCTGCAGAG AGAAATGAGC GTAGCTAAGA GACTGTTGAA AGAAAAACAA AGCCATCATC
  ACAAAAGCAC AAAGTACCAA GAACATAATA CCACCAAAAA TCAACAACAT AATGGCTCCA
  GTCAGCACAG ACTTTTAAAT ATTAACTTTA AATATAGATG ATCTCACTTC TCCAATTAAA
  Y
  AACATGCTGG CTTAATGGAT CAAGAAACAA AATCCATCTA CCTGTTGCCT ACAAGAAACA
  CATTTTCAGT TTTAAAGATA GACACTACAC ACTGCCTTAG AGTAACAGGA TGGGTAAAGA
  CTCTCCAGTC AAACGAGACA GGGGACTAGG CAGCAACTGG CATTGCCGTT CTAATATAAG
  TCAAAATAGA CTAGAAGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403018277	MGP_WTSI_X_8468416	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238673764					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403018277	MGP_WTSI_X_8468416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:8757529 () rs orientation: forward

Symbol	Name	Function Class
B630019K06Rik	RIKEN cDNA B630019K06 gene	1092 bp upstream
Cpgi22597	CpG island 22597	1088 bp proximal
Gm54079	predicted gene, 54079	within coordinates
Rr689805	regulatory region 689805	602 bp proximal
Rr689806	regulatory region 689806	1652 bp proximal
Tssr160504	transcription start site region 160504	1064 bp upstream
Tssr160505	transcription start site region 160505	1086 bp upstream
Tssr160506	transcription start site region 160506	1153 bp upstream
Tssr160507	transcription start site region 160507	1731 bp upstream
Tssr162869	transcription start site region 162869	1622 bp downstream
Tssr162870	transcription start site region 162870	1648 bp downstream