rs238681337 SNP Detail

Summary

• ID
  rs238681337
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116610179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAATTTT ATTACTAAAC
  TGTTGTCATA CGTGGTTGGT GCCAGCGGTG AGCAATGGTG GTGGGCACTG GTGGACTAGG
  AAAAAATGCA AGAGCCAAAA TGCACTGAGA CTACTAGTCA TGAGTCGTAA GTCTTTGTTG
  CCTCACTTAA AGGTAGAGAG AGCATCCTTC TTGCCTGTAT AGAAAAAACA GCTACATCAG
  M
  TACAAAAGGC CCAAAGGGAT TGAGATTAGG CAGGCAGTCA AAGAGTGGTG GCGTTTTGGA
  AGGAGACAAA TGTGAGGAAA GAAAGGAGCA AAGCCACTGT GAGTGGAAAG ACTGGGAGGG
  AAGCCTGGGG AGAGGCCTGG GCCAGGAAAG GACACGAGCA TCAAAGTGGC AAAGAAAAGC
  GGTGTGAGCA ATCAAAGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369777200	MGP_WTSI_6_116583236	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238681337					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369777200	MGP_WTSI_6_116583236	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116610179 () rs orientation: forward

Symbol	Name	Function Class
Gm44154	predicted gene, 44154	273 bp downstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	within coordinates
Rr132438	regulatory region 132438	579 bp distal
Rr147140	regulatory region 147140	1579 bp distal
Rr147141	regulatory region 147141	823 bp proximal
Rr151415	regulatory region 151415	654 bp distal
Tssr62571	transcription start site region 62571	87 bp downstream
Tssr62572	transcription start site region 62572	126 bp downstream
Tssr62573	transcription start site region 62573	191 bp downstream
Tssr62574	transcription start site region 62574	349 bp downstream
Tssr62575	transcription start site region 62575	596 bp downstream
Tssr62576	transcription start site region 62576	1724 bp downstream