rs238682565 SNP Detail

Summary

• ID
  rs238682565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40273773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCAGAAA TCTGGCTTCT
  CAATTCTCAT CTGACGAATA TTAGTCATAA CATTATTTTA AAGCTGACAA TTTAAAAATA
  ACCTAGGTGT TGAATACAAA TGGATTAGGC AGCAATGATA CATGCAATGC TGGCAGTTCA
  AGCAACAGTC ATCAGGTCTG GAGCCCATGC TTATAGATCC CAACACTAGG AAGGCTAAGG
  S
  AAGAGGGTTT CAAGTTTCAT ACAGCCTTAG TGAGTATGCA TAGCACTCGA GTATTCAACT
  AATTAAAAAA AATATTGTAA GGGAGATGGT TCAGTGGGTA AGAACACTTG TATGCAAGGT
  TGAGGACCGG AGTTCAAATC CCCAGAATCC ATGTAAAAGC CAGATATAAT CTCATACACC
  TGTAACTGCA GAGCTCTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915570	CHEV_9_40170062	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238682565					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40273773 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	740 bp downstream
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr200102	regulatory region 200102	1828 bp proximal