rs238684567 SNP Detail

Summary

• ID
  rs238684567
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31218923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCAACC TCATGTGGCC
  TGCTGTGTCT TATGTAGGAT TTATAGTTAA GAATGTCTGC TGAAAGCAGG CAGAGGTGTT
  GCACGCCATC CCAGCACTTG GGAGGCAGAG GCAGGCAGAT TTCTAAGTTC GAGGTCAGCC
  TGGTCTATGA GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ATCCCTGTCT CGAACCCTCC
  T
  CCCCCCCCCC CCAAAAAAAG AATGTTTGCT GTGTTGCTTT TATACACACA GTTTTTATAT
  ACACAGTTCT GGTATTACCT TATTATGGAT GGTGAGATGT TAATTGTGTG CCTGACACTT
  GGAAGAAGGG ATTGTCTTAC ATTAACATAA GAGAGTGTAA GTTTCAGAGA GTATATAAGT
  TTCAGCTCCC TGTACTAAAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	NZB/BlNJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss390704846	MGP_WTSI_14_32310152	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	NZB/BlNJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs238684567					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390704846	MGP_WTSI_14_32310152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31218923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	1208 bp distal
Eaf1	ELL associated factor 1	within coordinates
Mettl6	methyltransferase 6, methylcytidine	1926 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124944	transcription start site region 124944	1871 bp downstream
Tssr124945	transcription start site region 124945	1785 bp downstream
Tssr124946	transcription start site region 124946	543 bp downstream
Tssr127966	transcription start site region 127966	1981 bp upstream
Tssr127967	transcription start site region 127967	1912 bp upstream