rs238688951 SNP Detail

Summary

• ID
  rs238688951
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46457061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAATAT GTATAAGTGC
  TTTTTTGAGG CAGGGTCTCT ACATAGCCTT GGCTGTCCTG GAACTTACTC TGTTGACTAA
  GCTGGCCTTG AACTTACAGA GATCAGTCAC TCTCTGGCTC CCAAATGCTA GATAAAAAGC
  ATGTACTACC CACCCCAGCC TTGTTTGTAA GCCTTAAACA CAGTGTATAG GTACAGGAAG
  S
  GGGGGTGGGA GGTGGGGGTG GGGGTGGGAG GGGGATGATG ATGATGCACA AGAGCAGAGG
  GCCCACTGAA GGGTGTAGAC TTGGAAGTCA AGGCTGTCTG CACATACTCT GAAAGGACTT
  GAAGGTGGGA GGAGTCACGT TGGGGGAGGA GCAGAAATGG GAGTTTGAGA TGACTATGAT
  CAAAATACAC TGTACACATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398315706	MGP_WTSI_17_46283084	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238688951					SNP	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398315706	MGP_WTSI_17_46283084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46457061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9215	CpG island 9215	1799 bp distal
Mad2l1bp	MAD2L1 binding protein	1250 bp downstream
Rr339890	regulatory region 339890	1460 bp distal
Rr341808	regulatory region 341808	within coordinates
Rr341809	regulatory region 341809	1540 bp proximal
Rsph9	radial spoke head 9 homolog (Chlamydomonas)	1919 bp upstream
Tssr148301	transcription start site region 148301	1917 bp upstream