rs238692061 SNP Detail

Summary

• ID
  rs238692061
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58276153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttacaggtg tgtgccaccg tgcctggCAA
  CATtttaagt ctcagtaaca actgaagact ccccaagtct ttgtttatat ggtctccatc
  taggaacatc taccaggtta gaaattaaag ctaagcaaat tcacagatct taattcaaat
  W
  ctcaaaagga aaatcagtta gccaagttca aggccagcct ggcctacata gtgagactct
  gtttcaaaaa acaaaaacaa aCAGTAAGTT ATATATATTA ATACTATTAA GAGTTTTACT
  TAGAAGTAAC TTCCAAAAta tttaatgagt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690041	CHEV_11_58198829	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238692061					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58276153 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	707 bp downstream
Tssr101736	transcription start site region 101736	639 bp downstream
Tssr101737	transcription start site region 101737	599 bp downstream
Tssr101738	transcription start site region 101738	581 bp downstream
Tssr101739	transcription start site region 101739	1396 bp upstream
Tssr101740	transcription start site region 101740	1460 bp upstream
Tssr101741	transcription start site region 101741	1488 bp upstream
Tssr108157	transcription start site region 108157	1443 bp downstream
Tssr108158	transcription start site region 108158	1495 bp downstream