rs238692713 SNP Detail

Summary

• ID
  rs238692713
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGAGCA GCTGACTTGG
  GCATGCGAGC TTCATCTCTG GGAGAGAGCT CTGCAGGGTT TCCATAATAA TAATTGACCT
  GGGATCTCCA AGTGGCACCG AGTGCCATTG TTTACTAGTA AGCTTGTTAG TGTGCTCCAC
  GCAGAGGACC TAAGCCTGCC TGGGCTGCGT AACCCATCCG GTTGCATGGT TGCACGCAGG
  K
  TGTATATTAT AGTGACTAAG CCCAGTTGGA GGAGGTAGGG AAGGTGAGCA GTTTTAGTCT
  GGAGGTTTTG CAAACCACCT CTGTCCGGAG AAAAGATGTG TTAAAGTTCT GGGCCGTGTA
  GACAGTTGTA AGTGAAAATA GTTAAGACTC GTCTTCAGTG GCAAGTTTGT AAATCCAAGC
  ATATTACTGT TAAATTACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859396	CHEV_19_56897283	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238692713					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811225 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	251 bp downstream
Ccdc186	coiled-coil domain containing 186	603 bp upstream
Cpgi11092	CpG island 11092	168 bp distal
Rr406045	regulatory region 406045	375 bp downstream
Rr550140	regulatory region 550140	877 bp distal
Rr550141	regulatory region 550141	614 bp distal
Rr550142	regulatory region 550142	113 bp distal
Tssr157215	transcription start site region 157215	829 bp downstream
Tssr159886	transcription start site region 159886	706 bp upstream
Tssr159887	transcription start site region 159887	573 bp upstream