rs238701046 SNP Detail

Summary

• ID
  rs238701046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGATTA AATTAATACA
  CAATGTTAAA AGAAACTCAA GAGAAATGAA AAGAACCACC TTTAGAAAAC CGTTTGTCAC
  CATCTTCACT GTTGTGAAGA AGTTCTCCCA GCTAGGCCTT CCTAGAAGAA TTTCAGGTCC
  ACAGCTCCTC CTACTCACCC GGTGTCCACC ACACCCCTTA TCAAGACCAT GCATCCTGTT
  K
  CCACACATGC CCCTGGGTGA CCTTCTCTAG CTCCTCTCAA AGGCTTGTGC ATGGAAGAAC
  CCTGGCCCAC AAGTCCAGCC AACCAGATCC CAGTTCCAGG TGTGTTAGTA AGAATATATT
  CACAATATTC CTGGCACCAA ATATGTGGAG TTGTCCACAC CAACAGCCAG TTTCTTCCAT
  CTTGCACATG TCCCCTTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396236641	MGP_WTSI_16_49770025	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238701046					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396236641	MGP_WTSI_16_49770025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590275 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1104 bp distal
Rr516711	regulatory region 516711	within coordinates
Rr516712	regulatory region 516712	1428 bp proximal
Tssr138713	transcription start site region 138713	700 bp upstream
Tssr141324	transcription start site region 141324	1203 bp upstream
Tssr141325	transcription start site region 141325	1174 bp upstream
Tssr141326	transcription start site region 141326	1133 bp upstream
Tssr141327	transcription start site region 141327	1110 bp upstream
Tssr141328	transcription start site region 141328	90 bp upstream
Tssr141329	transcription start site region 141329	878 bp downstream
Tssr141330	transcription start site region 141330	893 bp downstream
Tssr141331	transcription start site region 141331	906 bp downstream
Tssr141332	transcription start site region 141332	934 bp downstream
Tssr141333	transcription start site region 141333	1769 bp downstream
Tssr141334	transcription start site region 141334	1924 bp downstream