rs238701707 SNP Detail

Summary

• ID
  rs238701707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58278603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGCTAAC GTGTCAATCC TGGCTAACAG
  AACTCTTGGG AATGTGGTCT AGTGATGTCC AAGAAGGAAA AAAAAAGGTA CCAATCAAAA
  ACCAATAACC AGCCTGTCTC AGCTAAAAAA CAGCTCAGAC TTATACGAGC TTAAGACCTG
  Y
  ACCCAAATAC AAATTTCCTT TCAATTTCTG CTTAATGTTA ACTTCAAAGC TTAACTAGAA
  CCACAGAGAT TTCAGGATAT CCAAGTATTC TGTTTTTTTT TAAACCTTTA AACCTAtttt
  tttttaaaga tttatttatt tattatatgg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690067	CHEV_11_58201279	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238701707					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58278603 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	1016 bp downstream
Tssr101740	transcription start site region 101740	971 bp downstream
Tssr101741	transcription start site region 101741	953 bp downstream
Tssr108157	transcription start site region 108157	973 bp upstream
Tssr108158	transcription start site region 108158	941 bp upstream