rs238702339 SNP Detail

Summary

• ID
  rs238702339
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGACC TCTTTTACCT
  ATGTACTATG ACACACACAA ATAAATGTGA TAAATAGATC ATTAGCAAAT GTTTCATCTT
  TATAACCAAG ATTTAAAACA TAACATGGCA GGAGAGATTG TCCAGTGGTT AGTGCACATA
  CCACCCTTCC ATCAGAGAAC CTGAATTGCC AGCAACCACA TCAGATGGCT GATAACCACC
  W
  GTGACTCCAG CTCTCAGAGG ATTACATGCC TCGTGCCTAT GCAGGCATCT ACACTCACAA
  CACACACACA CACACACACT CGCAAAACAC ACATACACAC TTTTTAAAAA ATACAGCAAT
  AGTGAACAAA AGAGAAAGTT GGAAGAACTA CTAAGAGAAC TGAGCTCCTC TGTGGGCCTA
  GCCTCTCAAC CAGCAGCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324480473	CHEV_13_93122868	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238702339					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1460 bp proximal
Dhfr	dihydrofolate reductase	1870 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403895	regulatory region 403895	1847 bp downstream
Rr403896	regulatory region 403896	1587 bp upstream
Rr483661	regulatory region 483661	1323 bp proximal
Rr483662	regulatory region 483662	1604 bp proximal
Rr483663	regulatory region 483663	1754 bp proximal
Tssr120622	transcription start site region 120622	1835 bp upstream
Tssr123429	transcription start site region 123429	1590 bp downstream