rs238711628 SNP Detail

Summary

• ID
  rs238711628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141265871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTCGGCA GCGGCGGCGG
  CTCCTCCGGC TCCCCCCGGT GCAGAGACCA TCCCTCTCCC CCAGGTTCTG ACTCTCGGGC
  CTCGCAGCTC CGCTCTGCCG CCACCAAACA CCCGAAGCCG ACCCTCGCGC TCCGGCGGCG
  CATGCGCGCG GGCGGCGGCG GGCGGGGGAG CGGGAGGAGG GGCGAGCGAG ACCCGGGCGG
  Y
  CGCGACTACG ACGGAGCCGG CGCTGTGGCT GCCGGACGCT TCCCACCGGC GCGCGCGGCC
  CGCCTCCCGC CGCCTGGCCA CCGCCCCCTG GCCGCGGGCG CGCGCGCGTC CTCCCGCCCC
  GACGCGGAGG GCCTCCCAGC CGGCGCGCAG GCGCGCGGAG CTCGGAAGGG GGAGGAATGC
  GGAGCCGGGA AGCGGCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363523220	MGP_WTSI_4_141094475	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs238711628					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363523220	MGP_WTSI_4_141094475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141265871 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	649 bp upstream
Cpgi15233	CpG island 15233	1353 bp distal
Cpgi15234	CpG island 15234	within coordinates
Gm4123	predicted gene 4123	1143 bp downstream
Gm68462	predicted gene, 68462	530 bp downstream
Rr1207	regulatory region 1207	701 bp distal
Rr603788	regulatory region 603788	1755 bp distal
Rr603789	regulatory region 603789	within coordinates
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	35 bp upstream
Tssr44322	transcription start site region 44322	2 bp downstream