rs238714776 SNP Detail

Summary

• ID
  rs238714776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4703857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTTACC CAGTTGTCCT
  CTGGTTAAAG GTATTCCCTT TGCGGCTGAG GATGGGAGAA GAACCTCGGG AAGTGGGGGA
  GAGCTACTGT AGAATTGTCG ACATTTTCAG ACTTGGTTTA CATGGGAGAC GCTCGAAATT
  CTGAGGGTGT CTAAATGTAG ACAGAAGATG AAGGGACTGA GGCATTCCGG TTTCAGTATC
  Y
  AGCTGGGCAG CCGAGGTTAG CGTCGTGTGA AGGAGATAAC CCCCTTAGCC GGAGCCTCTT
  GGTTCGACCC ACTGTGGCTA CTCACGTGAG AGGTGGTGGT GGTGGTGGTG GTGGTGGTGG
  TGGTGGTGGC AAGCTTGGGA AGCGTAGTAC GCAGGCGCAT TGGCTGCCTG GCCTGGACTC
  CATTTCCCCT GGAACTGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395254923	MGP_WTSI_16_4885993	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238714776					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395254923	MGP_WTSI_16_4885993	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4703857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7923	CpG island 7923	within coordinates
Gm60219	predicted gene, 60219	within coordinates
Gm60232	predicted gene, 60232	517 bp downstream
Mgrn1	mahogunin, ring finger 1	256 bp upstream
Rr510952	regulatory region 510952	within coordinates
Rr510953	regulatory region 510953	742 bp proximal
Tssr136882	transcription start site region 136882	142 bp upstream
Tssr136883	transcription start site region 136883	207 bp upstream
Tssr136884	transcription start site region 136884	215 bp upstream
Tssr136885	transcription start site region 136885	246 bp upstream
Tssr136886	transcription start site region 136886	278 bp upstream
Tssr136887	transcription start site region 136887	309 bp upstream