rs238721219 SNP Detail

Summary

• ID
  rs238721219
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46047749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGGAGCC CACCCGGACT
  GTCCCCCTGG TCGGCCCACT CGGGGGGCCC GGCCCCTCTT CCCAGCCCCT TCCCCGCCGG
  CGCGGCGCGG CGCGGCCCCT CCCCCAGGCC GAGCGCCGCC TCCCCCTCCC CTCCTCCCCC
  TCCCATCCCG CGCTGCAGCT GCTGCCGACG GCCCATTCTG CACGTAGCGA ATGGAGGAGC
  M
  GCACAAGGGA GGCCTCGAGT GCGCGCGCGC GGGAGCCCGG GGCCGCGCGG GCGGGGGAGC
  GGAGAAGTGA GCGCGTGCGC GGCGTCGCGC CGCGTCCCGG AGCGCGCGCG CGCCAAGTTC
  CGGAGCGCGC GGTTTGTCCG CGCGCGGCTG CGGGGCTGGT GATGCTCAGC GGTAGCCACC
  AGTCCCTCTC TCCCAGGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398306223	MGP_WTSI_17_45873772	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	C	A	C	A	C	C	C	A	A	A	C	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238721219					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	C	A	C	A	C	C	C	A	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398306223	MGP_WTSI_17_45873772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46047749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9208	CpG island 9208	within coordinates
F630040K05Rik	RIKEN cDNA F630040K05 gene	within coordinates
Rr392669	regulatory region 392669	within coordinates
Rr527527	regulatory region 527527	1173 bp distal