rs238722343 SNP Detail

Summary

• ID
  rs238722343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107564771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTAGGG GGCAGTCCTA
  AGGGAAAACG CAGAACGCCT GCTGGCCATT GATACTTTGG TTTGCCTGAT GCCCTCACTG
  CAGGGTCCCA CCCCATCCAT ACTGGCTGTT TAGTAAGGAT TAGTTCAGGG CTTCCCCCTG
  AAGGCACTGT GTATGCTAAC ACAGTGGCAG AGCCAAGGGC ATAGCAGGGA CAGGCCTGGG
  W
  AAGATGGTTG ATTTGGACTG ACTGCAGGTG AACACTGTGC CTCTAGACTT CATTCGGCTT
  TCACAGGGTC TTCAAGACAT GCCTTGCATC GACAAGGGCA GGACTGGCCT AGATGGGGCT
  GTTTCTGCCT GTGCCCATTC TCTCTGCCCT ATACCTGGTC ACTTCTCCCT GGTGGACCTG
  TAGAAGGGCC CTTATCATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250230	CHEV_4_107380179	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238722343					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107564771 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Tssr38261	transcription start site region 38261	526 bp downstream
Tssr38262	transcription start site region 38262	512 bp downstream
Tssr38263	transcription start site region 38263	502 bp downstream
Tssr38264	transcription start site region 38264	495 bp downstream
Tssr38265	transcription start site region 38265	475 bp downstream