rs238726729 SNP Detail

Summary

• ID
  rs238726729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:97726121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaggcagta ttttaacaaa tgataccatc
  tacaaacaaa agaataaagc tggacctacc caatacactg tctacaaaaa tgaactcaaa
  atggattagt ctatgacaga cacacatata actactggaa agaaaaAGAA AAAAAAAAAa
  Y
  ttgggaggca aaggcaggaa gagaactggg tgctcaaagc cagcatttag atatgcaatt
  ttaaaaccaC AACAAAATAC TGTCTCATAT CCTTTAGCTC Agtggcttgc agcctgtagg
  aagcaatcct ttcacaggga tcacctaaag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325906037	CHEV_X_95877854	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238726729					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:97726121 () rs orientation: forward

Symbol	Name	Function Class
Ophn1	oligophrenin 1	within coordinates
Rr5052	regulatory region 5052	80 bp proximal
Rr8080	regulatory region 8080	232 bp proximal