rs238727037 SNP Detail

Summary

• ID
  rs238727037
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:143119773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCTTA GTGAAAGTAT
  CCAGGCCTTG AGAAGTACAG ATTGGAATAC TGTGCTGTTG TTGATTAGAG CAAATACGGT
  TCTCCTGTGG CTACTTTTTT TTTTTTTTTT TTTTTTTTTG CTTTTCATTG CCAGTTTGTA
  ATCGGGGAGG GGTACATTAA TGTGAGGTTA AGGAAAATAT TGAAATTAAT CTCAGTCCTT
  K
  GTAAGCATGC CCTACTCCTT TGTTTATGCA TAAGAAAACG ATTTATAGCT TGTACCCTTA
  CAAGTTGAAA GTTGAGGTTG AAAGTCCAGG ATAGAGTCAT TAGCCCTTAA TCTCAATAAA
  GATGACCATT TTTTAACATA AGGAGGCATG GCTTCTTTGC CTTTGCCTAA GATCAGGTGT
  AGTAGCAGCT GCACTTAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404807862	MGP_WTSI_X_140771320	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238727037					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807862	MGP_WTSI_X_140771320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143119773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg13	asparagine-linked glycosylation 13			Intron
				Noncoding-Transcript-Variant
Rr395738	regulatory region 395738			188 bp downstream
Rr395739	regulatory region 395739			847 bp upstream
Rr694213	regulatory region 694213			1551 bp proximal
Tssr162278	transcription start site region 162278			946 bp downstream
Tssr162279	transcription start site region 162279			850 bp downstream
Tssr162280	transcription start site region 162280			778 bp downstream
Tssr162281	transcription start site region 162281			754 bp downstream
Tssr162282	transcription start site region 162282			723 bp downstream
Tssr162283	transcription start site region 162283			701 bp downstream
Tssr162284	transcription start site region 162284			685 bp downstream
Tssr162285	transcription start site region 162285			669 bp downstream
Tssr162286	transcription start site region 162286			639 bp downstream
Tssr162287	transcription start site region 162287			627 bp downstream
Tssr162288	transcription start site region 162288			608 bp downstream
Tssr162289	transcription start site region 162289			580 bp downstream
Tssr162290	transcription start site region 162290			548 bp downstream
Tssr162291	transcription start site region 162291			80 bp downstream