rs238728670 SNP Detail

Summary

• ID
  rs238728670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8058953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAGAAC TAAATAGATT
  GACTGACATG TTGGTGAAGA AGTTGAAAGC ATTTGATTAT CACCAGTTTG TAGACAAAAC
  CAACAGCAAA ATCCGTGAGA TGACTCAGAG AATCAATGCT GAAATCCAAG CTCTCAAACT
  TCCACAAAAA ATGGAAGCAT TAAAACTGTT GGTAGAAGAC TTCAAAACCA CAGTCTCCAA
  Y
  TCCCTGGAAA GACTCAAGGA CACCAAAGTA ACTGTGGTCA TTGATTGGCT GCAGGATATT
  TTGACTCAAA TGAAAGACCA TTTCCAAGAT ACTCTGGAAG ATGTAAGAGA CCGAATTTAT
  CAAATGGACA TTCAGAGGGA ACTGGAGCAC TTCTTGTCTC TGGTAAACCA AGTTTACAGT
  ACACTGGTCA CCTATATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064690	MGP_WTSI_12_8015759	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238728670					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064690	MGP_WTSI_12_8015759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8058953 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	241 bp downstream
Tssr112635	transcription start site region 112635	1986 bp downstream
Tssr112636	transcription start site region 112636	1521 bp downstream
Tssr112637	transcription start site region 112637	1441 bp downstream
Tssr112638	transcription start site region 112638	1376 bp downstream
Tssr112639	transcription start site region 112639	1134 bp downstream
Tssr112640	transcription start site region 112640	1092 bp downstream
Tssr112641	transcription start site region 112641	1040 bp downstream
Tssr112642	transcription start site region 112642	966 bp downstream
Tssr112643	transcription start site region 112643	877 bp downstream
Tssr112644	transcription start site region 112644	663 bp downstream
Tssr112645	transcription start site region 112645	561 bp downstream
Tssr112646	transcription start site region 112646	532 bp downstream
Tssr112647	transcription start site region 112647	360 bp downstream
Tssr112648	transcription start site region 112648	338 bp downstream
Tssr112649	transcription start site region 112649	133 bp upstream
Tssr112650	transcription start site region 112650	192 bp upstream
Tssr112651	transcription start site region 112651	263 bp upstream
Tssr112652	transcription start site region 112652	287 bp upstream
Tssr112653	transcription start site region 112653	314 bp upstream
Tssr112654	transcription start site region 112654	330 bp upstream
Tssr112655	transcription start site region 112655	348 bp upstream
Tssr112656	transcription start site region 112656	370 bp upstream
Tssr112657	transcription start site region 112657	385 bp upstream
Tssr112658	transcription start site region 112658	418 bp upstream
Tssr112659	transcription start site region 112659	471 bp upstream
Tssr112660	transcription start site region 112660	623 bp upstream
Tssr112661	transcription start site region 112661	854 bp upstream
Tssr112662	transcription start site region 112662	1098 bp upstream
Tssr112663	transcription start site region 112663	1333 bp upstream
Tssr112664	transcription start site region 112664	1358 bp upstream
Tssr112665	transcription start site region 112665	1523 bp upstream
Tssr112666	transcription start site region 112666	1532 bp upstream
Tssr112667	transcription start site region 112667	1579 bp upstream
Tssr112668	transcription start site region 112668	1717 bp upstream
Tssr112669	transcription start site region 112669	1802 bp upstream
Tssr112670	transcription start site region 112670	1855 bp upstream
Tssr112671	transcription start site region 112671	1970 bp upstream