rs238730271 SNP Detail

Summary

• ID
  rs238730271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43972995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCTGCC AGAAAGGCCG
  GGCCGCTAAA TCTGAGACTT CCGCGCTCGA CTTTACAGGC TTCCGGTCCG CAGCGGGTTA
  AGCCAACCTC GGCGGCGTCG CGAGGATCCC ACGCCTCAGG CAGACAGCCC GTTCCTCTCG
  CTGCTTCTCA CGGAGAGTGA CAGCTCGGAA GGCAAGAACC TCCCTCCAGT GCGTTGTCAT
  Y
  CGCAGCAGCG CACACTCCGT TCCAGCTCTG CAGCCTGGGT AACATTCCCT CGTCGTGACT
  CGTAGCGGCG CCGTTAGCTT ACGTTGAAGC GTATGATTGG CTAGACACCT CTGACCGCAC
  ACGATTGGGT ACTGGTGGCC AGGCTCCGCC CCTTCCCCAC CTCCGTCCCG CGGTAGCCGG
  GTGTCCTCGC GCCGCTCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349440338	MGP_WTSI_1_43990680	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238730271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349440338	MGP_WTSI_1_43990680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43972995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi222	CpG island 222	within coordinates
Gm57117	predicted gene, 57117	within coordinates
Rr29382	regulatory region 29382	within coordinates
Rr366891	regulatory region 366891	within coordinates
Tpp2	tripeptidyl peptidase II	135 bp upstream
Tssr6550	transcription start site region 6550	209 bp downstream
Tssr6551	transcription start site region 6551	141 bp downstream
Tssr6552	transcription start site region 6552	145 bp upstream
Tssr6553	transcription start site region 6553	922 bp upstream
Tssr11507	transcription start site region 11507	2 bp downstream