rs238742126 SNP Detail

Summary

• ID
  rs238742126
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54798828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGACCAAG ATGGCCTCAA
  ACTCAGGTCT GCTTGCCTCC TAAATGCTGA GATCAAAGGT GTGCGCCACC ACTGCCCAGC
  TCAACAGTCC ATTCTCAAGC AAATGTTAAA GGCAGACTAG CTCAGCCCTG CTCTTAACTC
  AGTATCCATC CAGGAAAGGG CACCTAGGGT CAGGGTGTAT AAACGAGGCT GGCAATGGCT
  K
  AACCCGGTAT CTGACTGGAA CCATGTCTCC TTAATGTCTC TATCCTGTCT TTTCTTCTCA
  GTGAGGGCAA ACAGAAGCCT AAGGGCCAAA GCCTGATGGC CCAAGGGCAA ACACTTTGGG
  GCCAAGCAGA CCCAGGCCAC TTGGCTGGCA CCTGCAGGAG AGTTCCTGGG CTGGGTGATG
  GCGCTGCCTC TAATTCCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428879	MGP_WTSI_11_54721504	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238742126					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428879	MGP_WTSI_11_54721504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54798828 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	1639 bp downstream
Tssr101551	transcription start site region 101551	1737 bp downstream
Tssr101552	transcription start site region 101552	1674 bp downstream
Tssr101553	transcription start site region 101553	1221 bp downstream
Tssr101554	transcription start site region 101554	1209 bp downstream
Tssr101555	transcription start site region 101555	1167 bp downstream
Tssr101556	transcription start site region 101556	872 bp downstream
Tssr101557	transcription start site region 101557	842 bp downstream
Tssr101558	transcription start site region 101558	825 bp downstream
Tssr101559	transcription start site region 101559	802 bp downstream
Tssr101560	transcription start site region 101560	756 bp downstream
Tssr101561	transcription start site region 101561	533 bp upstream
Tssr101562	transcription start site region 101562	557 bp upstream
Tssr101563	transcription start site region 101563	607 bp upstream
Tssr101564	transcription start site region 101564	621 bp upstream
Tssr101565	transcription start site region 101565	1050 bp upstream
Tssr101566	transcription start site region 101566	1100 bp upstream
Tssr101567	transcription start site region 101567	1461 bp upstream
Tssr101568	transcription start site region 101568	1537 bp upstream
Tssr101569	transcription start site region 101569	1620 bp upstream
Tssr101570	transcription start site region 101570	1642 bp upstream
Tssr101571	transcription start site region 101571	1696 bp upstream
Tssr101572	transcription start site region 101572	1791 bp upstream
Tssr101573	transcription start site region 101573	1828 bp upstream
Tssr101574	transcription start site region 101574	1842 bp upstream
Tssr101575	transcription start site region 101575	1890 bp upstream
Tssr101576	transcription start site region 101576	1904 bp upstream
Tssr101577	transcription start site region 101577	1933 bp upstream
Tssr108006	transcription start site region 108006	717 bp upstream
Tssr108007	transcription start site region 108007	562 bp downstream
Tssr108008	transcription start site region 108008	622 bp downstream
Tssr108009	transcription start site region 108009	638 bp downstream
Tssr108010	transcription start site region 108010	1059 bp downstream
Tssr108011	transcription start site region 108011	1655 bp downstream
Tssr108012	transcription start site region 108012	1689 bp downstream
Tssr108013	transcription start site region 108013	1783 bp downstream
Tssr108014	transcription start site region 108014	1790 bp downstream
Tssr108015	transcription start site region 108015	1873 bp downstream
Tssr108016	transcription start site region 108016	1925 bp downstream
Tssr108017	transcription start site region 108017	1976 bp downstream
Tssr108018	transcription start site region 108018	1991 bp downstream