rs238749889 SNP Detail

Summary

• ID
  rs238749889
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30164357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTATAAC ATAGTCAATT
  GCTTGAGCAT GGTGGAATAT ATCCTTAACC CCAGCACTTG CGAGGCAAAG GCAGGTGGAT
  CTCTGTTGAG TTTGAGGCCA GCCTGGTCTA CAGCCTGGTT CTAGGCCAGC CTGGTCTACA
  TAATACAACC CTGTCCCTAA ACAAACAAAC AAACCCCCCC ACCCCACCCC CCACCCCCCC
  A
  CATGCCCGAT GATACATACC TGCAATGCCA GCACTTGGGA GGAGAGACGG AGGGGAATCT
  GGAGTCTGAG CCACTCTGGG CTATAAGGCT AGACCCCGCC ACAAAAATAC ATACATAAAC
  TTAATGAACC TCTAAGAAAC ATTGAACAAA TAAATGGAAC CCCCTGCAAA GGAGAACGGA
  GAAATGGGAT ACTGACATAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	I/LnJ	QSi5/Ianm	SPRET/EiJ
ss367827973	MGP_WTSI_6_30114358	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	I/LnJ	QSi5/Ianm	SPRET/EiJ
rs238749889					SNP	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367827973	MGP_WTSI_6_30114358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30164357 () rs orientation: forward

Symbol	Name	Function Class
Mir182	microRNA 182	1560 bp downstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1560 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rr627708	regulatory region 627708	1840 bp distal