rs238750842 SNP Detail

Summary

• ID
  rs238750842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136011930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAACAG AACACTCTAA
  TAAAAGCATG GCCGGGAATC TTATTTGGAA AAAAAAAATT CCCCAAGTCC TTCAGTGTGT
  GTGGATGTAT CTGTAAAACA AAAGAAAAGT CCCTTTTCCC AGCCTAGGCA GAGAAGTCTC
  CCGTTCAGTC AGAGACAACA GGCGTCTGGG CATCAAGCCA AGGTTTGGGG ATATTTATAA
  Y
  TTGAAGAGGG TGGGAGTCCC TAATAAGCTG CTATATTCTT TTTCCATCAC TTCCCTCTCC
  AAGGCTACAG CAAGCTGGGA GCTCTTCCCC ACACAGAATC CCTGTTTTGC TTAGCCCTCG
  CCTTCCATTG TCTAATTCCT TCATCCCCGC TAGGGAAAGG AAAGGCTACA AGTCCTTCCA
  TTTGGAGGAT TCTGAGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363387903	MGP_WTSI_4_135840534	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238750842					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363387903	MGP_WTSI_4_135840534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136011930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	1201 bp proximal
Rr398613	regulatory region 398613	626 bp upstream
Rr602339	regulatory region 602339	1217 bp distal
Rr602340	regulatory region 602340	43 bp distal
Rr602341	regulatory region 602341	958 bp proximal
Rr602342	regulatory region 602342	1459 bp proximal
Tssr39694	transcription start site region 39694	18 bp upstream
Tssr39695	transcription start site region 39695	39 bp upstream
Tssr39696	transcription start site region 39696	89 bp upstream
Tssr39697	transcription start site region 39697	1442 bp upstream
Tssr39698	transcription start site region 39698	1496 bp upstream
Tssr39699	transcription start site region 39699	1559 bp upstream
Zfp46	zinc finger protein 46	mRNA-UTR