rs238753032 SNP Detail

Summary

• ID
  rs238753032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48048245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCGAAG TTAGGGGCAG
  CTGGAGCTCT CCTCCCTGCC AGTCAAGCTG AGCTTCCAAC CACAAAGTTT CACTAGGCTG
  TGCACCGGGA CTTTCGCCTG GGAGCCGCTC TGAGCGCCCT CCGGAATGTA CCCCCTCTGA
  GCCACCGGGT GGCCCTGAGC CTTGAAGCCG CCCACCCTCG GGGACACCGC CCGCTGAGTG
  M
  AGGGGACCTC CCTCGGTCCG TCGTAGCAGC AGCCAAAGCT GTCTGCGGAG CGCACGGCTC
  CCAGCACAGG CCTTTCCTCT GTGCCCTTTT GTTTGCTTGA CCCCTGGCCC TCGAAACTCT
  CGACTAATAG AAGGGAAGAT CCATTAGCAT TTAGAATGAA AAGCGCAGAC TTTCTTAATT
  CCTCCGGGCA TTCATGCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430103	MGP_WTSI_4_48061117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238753032					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430103	MGP_WTSI_4_48061117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48048245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	1517 bp distal
Cpgi14279	CpG island 14279	within coordinates
Cpgi14280	CpG island 14280	624 bp proximal
Gm68858	predicted gene, 68858	1047 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	1058 bp distal
Rr591930	regulatory region 591930	557 bp distal
Rr591931	regulatory region 591931	199 bp distal
Rr591932	regulatory region 591932	444 bp proximal
Tssr37195	transcription start site region 37195	987 bp downstream
Tssr37196	transcription start site region 37196	966 bp downstream
Tssr37197	transcription start site region 37197	935 bp downstream
Tssr37198	transcription start site region 37198	918 bp downstream
Tssr37199	transcription start site region 37199	868 bp downstream
Tssr37200	transcription start site region 37200	856 bp downstream
Tssr37201	transcription start site region 37201	492 bp downstream
Tssr37202	transcription start site region 37202	357 bp downstream
Tssr37203	transcription start site region 37203	329 bp downstream
Tssr37204	transcription start site region 37204	156 bp downstream
Tssr37205	transcription start site region 37205	126 bp downstream
Tssr37206	transcription start site region 37206	30 bp upstream
Tssr37207	transcription start site region 37207	781 bp upstream
Tssr37208	transcription start site region 37208	835 bp upstream
Tssr37209	transcription start site region 37209	1681 bp upstream
Tssr41633	transcription start site region 41633	1284 bp upstream
Tssr41634	transcription start site region 41634	1095 bp upstream
Tssr41635	transcription start site region 41635	803 bp downstream
Tssr41636	transcription start site region 41636	852 bp downstream