rs238757705 SNP Detail

Summary

• ID
  rs238757705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110680884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCTACT ACCCACTCCC
  AAAACCATAC CTGAAACGAG AAGCACCCCC TTCTGCAATC GCACTCTCCA CTTTGGCGGC
  TTGACAACGA AGAATCTTCA AAAGAATAAT ATTAATGGAT GGGGTGGGGA GGGGAGGGGA
  TGGTAGAAAT GAAAAGCCTG GAAAGAGAGA AAACACCAAA ATTAGGTACT GCCATACTGA
  R
  CTATAAACTT TCAAATATAA TTTATTTCCG CTCCCAGCAC TGCAGCTGGT TGAACTTTCA
  CTGCATTGCA GCCCTCAGAA GACTAAAATA GAACGAAGTC AAAACCCACA AATACACAAT
  AAAACCTGTT TAGCCCCGTG GATTCTCTTA GTATTCAAGG ATGCAAAGAA CAGCTTTTGT
  GAGAAAAATA AAATGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719423	MGP_WTSI_7_118225191	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238757705					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719423	MGP_WTSI_7_118225191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110680884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	294 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm57201	predicted gene, 57201	888 bp upstream
Rr381309	regulatory region 381309	within coordinates
Tssr2372	transcription start site region 2372	1355 bp upstream
Tssr68538	transcription start site region 68538	1484 bp downstream
Tssr68539	transcription start site region 68539	1497 bp upstream
Tssr68540	transcription start site region 68540	1533 bp upstream
Tssr68541	transcription start site region 68541	1647 bp upstream
Tssr74295	transcription start site region 74295	1364 bp upstream
Tssr74296	transcription start site region 74296	731 bp upstream
Tssr74297	transcription start site region 74297	40 bp upstream
Tssr74298	transcription start site region 74298	349 bp downstream
Tssr74299	transcription start site region 74299	538 bp downstream
Tssr74300	transcription start site region 74300	770 bp downstream
Tssr74301	transcription start site region 74301	852 bp downstream
Tssr74302	transcription start site region 74302	931 bp downstream
Tssr74303	transcription start site region 74303	1320 bp downstream