rs238761677 SNP Detail

Summary

• ID
  rs238761677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:72993997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCCACTA TGTGACAACT
  GCTGTGGTTT GAATGTTGAG ACTTAAACCC CAGTGCAATT GTATTGATGG GTAAGACCTT
  TAGGGAGTGC TTAAGTGAGT GGGTGCTCCC TGCCTTTGTT GAAGAGCTCC AGAGAGCCCT
  CTCTGCCTGT GCCTGTGACC TGATGCAGGA GCTCAGCATT TGCTCCAGCG CTAAAGACTT
  S
  CAGCCTTTTG CCCTGCTCTC ACCATGACAG ACTCTAACCC CCTGGAACTG TTCCTGCCTG
  AATTATCAAT GGGAAGTTTG GGAATTTTTC TGAATTCAAA AAACAAAACA GCTGTCCTTG
  GGGTGTAGAA AAGAGAGGCT CATGAAACTG AAATGTATGC CTATTTTTCT GGATTTGTAT
  TCGTTTGTCA GCCTAAGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386473861	MGP_WTSI_12_74048210	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238761677					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386473861	MGP_WTSI_12_74048210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:72993997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4744	CpG island 4744	834 bp distal
Gm26709	predicted gene, 26709	within coordinates
Rr265547	regulatory region 265547	797 bp distal
Tssr113771	transcription start site region 113771	1580 bp downstream
Tssr113772	transcription start site region 113772	1535 bp downstream
Tssr113773	transcription start site region 113773	1526 bp downstream
Tssr113774	transcription start site region 113774	1513 bp downstream
Tssr113775	transcription start site region 113775	1449 bp downstream
Tssr113776	transcription start site region 113776	1423 bp downstream
Tssr116636	transcription start site region 116636	1757 bp upstream